{
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  "Package": "metanetwork",
  "Type": "Package",
  "Title": "Handling and Representing Trophic Networks in Space and Time",
  "Version": "0.8.0",
  "Date": "2022-12-08",
  "Authors@R": "c(\nperson(\"Marc\", \"Ohlmann\", role = c(\"aut\", \"cre\"), email = \"marcohlmann@live.fr\",\ncomment = c(ORCID = \"0000-0003-3772-3969\")),\nperson(\"Jimmy\", \"Garnier\", role = c(\"aut\", \"ctb\"), email = \"jimmy.garnier@univ-smb.fr\"),\nperson(\"Laurent\", \"Vuillon\", role = c(\"aut\", \"ctb\"), email = \"laurent.vuillon@univ-smb.fr\")\n)",
  "Description": "A toolbox to handle and represent trophic networks in\nspace or time across aggregation levels. This package contains\na layout algorithm specifically designed for trophic networks,\nusing dimension reduction on a diffusion graph kernel and\ntrophic levels. Importantly, this package provides a layout\nmethod applicable for large trophic networks. The package also\nimplements network diversity indices at different aggregation\nlevels and connectance computation.",
  "License": "GPL-3",
  "URL": "https://github.com/MarcOhlmann/metanetwork,https://marcohlmann.github.io/metanetwork/",
  "NeedsCompilation": "no",
  "Packaged": {
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  "BugReports": "https://github.com/MarcOhlmann/metanetwork/issues",
  "biocViews": "",
  "Language": "en-US",
  "Config/testthat/edition": "3",
  "Config/pak/sysreqs": "libcairo2-dev cmake libfontconfig1-dev\nlibfreetype6-dev libglpk-dev make libmagick++-dev gsfonts\nlibicu-dev libpng-dev libuv1-dev libxml2-dev libssl-dev",
  "Repository": "https://marcohlmann.r-universe.dev",
  "Date/Publication": "2023-06-05 11:59:39 UTC",
  "RemoteUrl": "https://github.com/marcohlmann/metanetwork",
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  "RemoteSha": "1d3a7b6659de085bb5b289666267861f5bd32352",
  "Author": "Marc Ohlmann [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-3772-3969>),\nJimmy Garnier [aut, ctb],\nLaurent Vuillon [aut, ctb]",
  "Maintainer": "Marc Ohlmann <marcohlmann@live.fr>",
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  "_created": "2026-05-13T07:45:22.000Z",
  "_published": "2026-05-22T09:59:55.518Z",
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      "date": "2022-12-05"
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    "%>%",
    "append_agg_nets",
    "attach_layout",
    "build_metanet",
    "compute_dis",
    "compute_div",
    "compute_metrics",
    "compute_TL",
    "diff_plot",
    "extract_networks",
    "ggmetanet",
    "ggnet.default",
    "group_layout.default",
    "is.metanetwork",
    "metanet_build_pipe",
    "metanet_pipe",
    "plot_trophicTable",
    "print",
    "TL_tsne.default",
    "vismetaNetwork",
    "visNetwork.default"
  ],
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      "name": "meta_angola",
      "title": "Angola fishery metanetwork metanetwork built from: Angelini & Velho 2011, Data from: Angelini, R., Velho, VF. (2011) Ecosystem structure and trophic analysis of Angolan fishery landings. Scientia Marina 75(2)",
      "object": "meta_angola",
      "file": "meta_angola.rda",
      "class": [
        "metanetwork"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "meta_norway",
      "title": "Norway soil metanetwork metanetwork built from: Calderon-Sanou et al. 2021, Data from: Calderon-Sanou, I., Munkemuller, T., Zinger, L., Schimann, H., Yoccoz, N. G., Gielly, L., ... & Thuiller, W. (2021). Cascading effects of moth outbreaks on subarctic soil food webs. Scientific reports, 11(1), 1-12.",
      "object": "meta_norway",
      "file": "meta_norway.rda",
      "class": [
        "metanetwork"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    },
    {
      "name": "meta_vrtb",
      "title": "European vertebrates metanetwork metanetwork built using data from: O'Connor, L. M., Pollock, L. J., Braga, J., Ficetola, G. F., Maiorano, L., Martinez-Almoyna, C., ...  & Thuiller, W. (2020). Unveiling the food webs of tetrapods across Europe through the prism of the Eltonian niche. Journal of Biogeography, 47(1), 181-192. and Maiorano, L., Montemaggiori, A., Ficetola, G. F., O'connor, L., & Thuiller, W. (2020). TETRA-EU 1.0: a species-level trophic metaweb of European tetrapods. Global Ecology and Biogeography, 29(9), 1452-1457.",
      "object": "meta_vrtb",
      "file": "meta_vrtb.rda",
      "class": [
        "metanetwork"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
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      "page": "pipe",
      "title": "Pipe",
      "topics": [
        "%>%"
      ]
    },
    {
      "page": "append_agg_nets",
      "title": "append aggregated networks",
      "topics": [
        "append_agg_nets",
        "append_agg_nets.metanetwork"
      ]
    },
    {
      "page": "attach_layout",
      "title": "compute and attach metanetwork layouts",
      "topics": [
        "attach_layout",
        "attach_layout.metanetwork"
      ]
    },
    {
      "page": "build_metanet",
      "title": "Build metanetwork object",
      "topics": [
        "build_metanet"
      ]
    },
    {
      "page": "compute_dis",
      "title": "compute pairwise network dissimilarity indices",
      "topics": [
        "compute_dis"
      ]
    },
    {
      "page": "compute_div",
      "title": "compute network diversity indices",
      "topics": [
        "compute_div"
      ]
    },
    {
      "page": "compute_metrics",
      "title": "compute network metrics",
      "topics": [
        "compute_metrics"
      ]
    },
    {
      "page": "compute_TL",
      "title": "compute trophic levels",
      "topics": [
        "compute_TL",
        "compute_TL.metanetwork"
      ]
    },
    {
      "page": "diff_plot",
      "title": "plot difference network",
      "topics": [
        "diff_plot"
      ]
    },
    {
      "page": "extract_networks",
      "title": "extract networks from a metanetwork object",
      "topics": [
        "extract_networks"
      ]
    },
    {
      "page": "ggmetanet",
      "title": "ggmetanet",
      "topics": [
        "ggmetanet"
      ]
    },
    {
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      "title": "Default configuration for ggnet",
      "topics": [
        "ggnet.default"
      ]
    },
    {
      "page": "group_layout.default",
      "title": "Default configuration for group-TL-tsne layout",
      "topics": [
        "group_layout.default"
      ]
    },
    {
      "page": "is.metanetwork",
      "title": "Test of belonging to class metanetwork",
      "topics": [
        "is.metanetwork",
        "is.metanetwork.metanetwork"
      ]
    },
    {
      "page": "meta_angola",
      "title": "Angola fishery metanetwork metanetwork built from: Angelini & Velho 2011, Data from: Angelini, R., Velho, VF. (2011) Ecosystem structure and trophic analysis of Angolan fishery landings. Scientia Marina 75(2)",
      "topics": [
        "meta_angola"
      ]
    },
    {
      "page": "meta_norway",
      "title": "Norway soil metanetwork metanetwork built from: Calderon-Sanou et al. 2021, Data from: Calderon-Sanou, I., Munkemuller, T., Zinger, L., Schimann, H., Yoccoz, N. G., Gielly, L., ... & Thuiller, W. (2021). Cascading effects of moth outbreaks on subarctic soil food webs. Scientific reports, 11(1), 1-12.",
      "topics": [
        "meta_norway"
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    },
    {
      "page": "meta_vrtb",
      "title": "European vertebrates metanetwork metanetwork built using data from: O'Connor, L. M., Pollock, L. J., Braga, J., Ficetola, G. F., Maiorano, L., Martinez-Almoyna, C., ...  & Thuiller, W. (2020). Unveiling the food webs of tetrapods across Europe through the prism of the Eltonian niche. Journal of Biogeography, 47(1), 181-192. and Maiorano, L., Montemaggiori, A., Ficetola, G. F., O'connor, L., & Thuiller, W. (2020). TETRA-EU 1.0: a species-level trophic metaweb of European tetrapods. Global Ecology and Biogeography, 29(9), 1452-1457.",
      "topics": [
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    },
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      "topics": [
        "metanet_build_pipe"
      ]
    },
    {
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      "title": "Execute 'metanetwork' pipeline",
      "topics": [
        "metanet_pipe",
        "metanet_pipe.metanetwork"
      ]
    },
    {
      "page": "plot_trophicTable",
      "title": "Plot trophic groups hierarchy",
      "topics": [
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      ]
    },
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      "title": "print metanetwork",
      "topics": [
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        "print.metanetwork"
      ]
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      "topics": [
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      ]
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      "topics": [
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      ]
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